PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19140s010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 94aa    MW: 10411.5 Da    PI: 5.7534
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19140s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS42.97.9e-142661273
            GRAS 12 vssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetsekn 73
                    vs++++++aq+lL+ ls ++sp+gd+++Rl++ ft+AL+ r++r   +++ +++++++ +++e++
  Csa19140s010.1  2 VSQSNFTAAQNLLSVLSLNSSPYGDSTERLVHLFTKALSVRINRlqqEQDPTAETVATCTANEMT 66
                    89***************************************999421223344444444444333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509858.701194IPR005202Transcription factor GRAS
PfamPF035142.7E-11266IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
FVSQSNFTAA QNLLSVLSLN SSPYGDSTER LVHLFTKALS VRINRLQQEQ DPTAETVATC  60
TANEMTMGNN NSTVFTSSVC KEQFLFRTKN NNSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3033492e-90AJ303349.1 Capsella rubella ORF1, ORF2, ORF3, ORF4, ORF5 and ORF6 (partial).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392620.16e-42hypothetical protein EUTSA_v10011480mg
SwissprotQ9ZWC52e-39SCL18_ARATH; Scarecrow-like protein 18
TrEMBLV4MF517e-42V4MF51_EUTSA; Uncharacterized protein
STRINGscaffold_105352.19e-39(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113292733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.13e-40GRAS family protein